I have not had to do this ( thankfully - knock on wood ) but I have heard that changing the compressor can be a PITA. I have heard quite a few say that there is not enough room to do the compressor from the bottom so you have to pull the clutch fan off to pull it up from the top side.
I am sure that you can probably do it and save alot of money ( probably around $900 in savings compressor $250, manifold assembly $165, suction hose and accumulator $90 + R134A [ prices are from Autozone online] ) . Have a local shop recover whatever 134A is left in the system if any and the rest you can do yourself. Autozone has the vaccum pump and gauge set for rent so you can recharge the system yourself ( upfront charge for rental but you get it back when returned ) just follow the pressure guidlines on the can.
One thing that I always recomend after haveing the A/C system open is to let the vaccum pump run over night to make sure any/all moisture is out of the system ( moisture with the 134A oil causes acid that will eat the lines and seals ). In the morning look at the gauge and see what it is reading and make a note of it. Turn the pump off ( make sure you close the line from the guages to the pump first or it will suck in air from outside ) then let it sit for 30 min to an hour and look at the gauge again to make sure that none of the vaccum has been lost. As long as you have not lost any vaccum then you do not have any more leaks and you can charge the system and enjoy.
It sounds harder than it really is, just take your time and you will be happy with the money savings